Vascular proteomics

The characterization of patients with acute coronary syndromes (ACS) at the molecular and cellular levels provides a novel vision for understanding the pathological and clinical expression of the disease. Recent advances in proteomic technologies permit the evaluation of systematic changes in protein expression in many biological systems and have been extensively applied to cardiovascular diseases (CVD). The cardiovascular system is in permanent intimate contact with blood, making blood-based biomarker discovery a particularly worthwhile approach. Thus, proteomics can potentially yield novel biomarkers reflecting CVD, establish earlier detection strategies, and monitor response to therapy. Here we review the different proteomic strategies used in the study of atherosclerosis and the novel proteins differentially expressed and secreted by atherosclerotic lesions which constitute novel potential biomarkers (HSP-27, Cathepsin D). Special attention is paid to MS-Imaging of atheroma plaque and the generation, for the first time, of 2-D images of lipids, showing the distribution of these molecules in the different areas of the atherosclerotic lesions. In addition new potential biomarkers have been identified in plasma (amyloid A1α, transtherytin), circulating cells (protein profile in monocytes from ACS patients) and individual cells constituents of atheroma plaques (endothelial, VSMC, macrophages) which provide novel insights into vascular pathophysiology.     

Evaluation of Crop Models for Simulating and Optimizing Deficit Irrigation Systems in Arid and Semi-arid Countries Under Climate Variability

The variability of fresh water availability in arid and semi-arid countries poses a serious challenge to farmers to cope with when depending on irrigation for crop growing. This has shifted the focus onto improving irrigation management and water productivity (WP) through controlled deficit irrigation (DI). DI can be conceived as a strategy to deal with these challenges but more knowledge on risks and chances of this strategy is urgently needed. The availability of simulation models that can reliably predict crop yield under the influence of soil, atmosphere, irrigation, and agricultural management practices is a prerequisite for deriving reliable and effective deficit irrigation strategies. In this context, this article discusses the performance of the crop models CropWat, PILOTE, Daisy, and APSIM when being part of a stochastic simulation-based approach to improve WP by focusing primarily on the impact of climate variability. The stochastic framework consists of: (i) a weather generator for simulating regional impacts of climate variability; (ii) a tailor-made evolutionary optimization algorithm for optimal irrigation scheduling with limited water supply; and (iii) the above mentioned models for simulating water transport and crop growth in a sound manner. The results present stochastic crop water production functions (SCWPFs) that can be used as basic tools for assessing the impact on the risk for the potential yield due to water stress and climate variability. Example simulations from India, Malawi, France and Oman are presented and the suitability of these crop models to be employed in a framework for optimizing WP is evaluated.     

Improving metastable impact electron spectroscopy and ultraviolet photoelectron spectroscopy signals by means of a modified time-of-flight separation

The separation of ultraviolet photoelectron spectroscopy (UPS) and metastable impact electron spectroscopy (MIES) is usually performed by a time-of-flight (ToF) separation using pre-set ToF for both types of signal. In this work, we present a new, improved ex situ signal separation method for the separation of MIES and UPS for every single measurement. Signal separation issues due to changes of system parameters can be overcome by changing the ToF separation and therefore allowing for the application of a wider range of measuring conditions. The method also enables to identify and achieve separation of the two signals without any time consuming calibration and the use of any special material for the calibration. Furthermore, changes made to the discharge source are described that enable to operate an existing MIES/UPS source over a broader range of conditions. This allows for tuning of the yield of UV photons and metastable rare gas atoms leading to an improved signal to noise ratio. First results of this improved setup are well in agreement with spectra reported in literature and show increased resolution and higher signal intensities for both MIE and UP spectra compared to the previous, non-optimized setup.     

A symbolic summation approach to Feynman integral calculus

Given a Feynman parameter integral, depending on a single discrete variable N$N$ and a real parameter ε$\epsilon$, we discuss a new algorithmic framework to compute the first coefficients of its Laurent series expansion in ε$\epsilon$. In a first step, the integrals are expressed by hypergeometric multi-sums by means of symbolic transformations. Given this sum format, we develop new summation tools to extract the first coefficients of its series expansion whenever they are expressible in terms of indefinite nested product–sum expressions. In particular, we enhance the known multi-sum algorithms to derive recurrences for sums with complicated boundary conditions, and we present new algorithms to find formal Laurent series solutions of a given recurrence relation.     

Autonomous landing at unprepared sites by a full-scale helicopter

Helicopters are valuable since they can land at unprepared sites; however, current unmanned helicopters are unable to select or validate landing zones (LZs) and approach paths. For operation in unknown terrain it is necessary to assess the safety of a LZ. In this paper, we describe a lidar-based perception system that enables a full-scale autonomous helicopter to identify and land in previously unmapped terrain with no human input.We describe the problem, real-time algorithms, perception hardware, and results. Our approach has extended the state of the art in terrain assessment by incorporating not only plane fitting, but by also considering factors such as terrain/skid interaction, rotor and tail clearance, wind direction, clear approach/abort paths, and ground paths.In results from urban and natural environments we were able to successfully classify LZs from point cloud maps. We also present results from 8 successful landing experiments with varying ground clutter and approach directions. The helicopter selected its own landing site, approaches, and then proceeds to land. To our knowledge, these experiments were the first demonstration of a full-scale autonomous helicopter that selected its own landing zones and landed.     

Maximum margin Bayesian network classifiers

We present a maximum margin parameter learning algorithm for Bayesian network classifiers using a conjugate gradient (CG) method for optimization. In contrast to previous approaches, we maintain the normalization constraints on the parameters of the Bayesian network during optimization, i.e., the probabilistic interpretation of the model is not lost. This enables us to handle missing features in discriminatively optimized Bayesian networks. In experiments, we compare the classification performance of maximum margin parameter learning to conditional likelihood and maximum likelihood learning approaches. Discriminative parameter learning significantly outperforms generative maximum likelihood estimation for naive Bayes and tree augmented naive Bayes structures on all considered data sets. Furthermore, maximizing the margin dominates the conditional likelihood approach in terms of classification performance in most cases. We provide results for a recently proposed maximum margin optimization approach based on convex relaxation. While the classification results are highly similar, our CG-based optimization is computationally up to orders of magnitude faster. Margin-optimized Bayesian network classifiers achieve classification performance comparable to support vector machines (SVMs) using fewer parameters. Moreover, we show that unanticipated missing feature values during classification can be easily processed by discriminatively optimized Bayesian network classifiers, a case where discriminative classifiers usually require mechanisms to complete unknown feature values in the data first.     

A Probabilistic Approach to Concurrent Mapping and Localization for Mobile Robots

This paper addresses the problem of building large-scale geometric maps of indoor environments with mobile robots. It poses the map building problem as a constrained, probabilistic maximum-likelihood estimation problem. It then devises a practical algorithm for generating the most likely map from data, along with the most likely path taken by the robot. Experimental results in cyclic environments of size up to 80 by 25 meter illustrate the appropriateness of the approach.     

Regional Process Modeling for Design for Environment

This research is an effort towards providing higher level Design for Environment (DFE) tools for a broad industrial region. Issues ranging from the levels immediately above existing design tools, to the envisioned highest level for a broad geographical region are discussed. A tool for the regional planning of the DFE activities is proposed, considering a model construction based on material flows across the industry. The Multi-Lifecycle approach is supported by organizing the input/output flows for industries, potentially utilizing waste material, side products and recycling. Capitalizing on the conceptual integration of the design and process activities, an Abstract Design Environment is used for the design of the basically process oriented material flow tool. Within the context, the relations among design, process and flow-modeling concepts are discussed.     

Bayesian Landmark Learning for Mobile Robot Localization

To operate successfully in indoor environments, mobile robots must be able to localize themselves. Most current localization algorithms lack flexibility, autonomy, and often optimality, since they rely on a human to determine what aspects of the sensor data to use in localization (e.g., what landmarks to use). This paper describes a learning algorithm, called BaLL, that enables mobile robots to learn what features/landmarks are best suited for localization, and also to train artificial neural networks for extracting them from the sensor data. A rigorous Bayesian analysis of probabilistic localization is presented, which produces a rational argument for evaluating features, for selecting them optimally, and for training the networks that approximate the optimal solution. In a systematic experimental study, BaLL outperforms two other recent approaches to mobile robot localization.     

Mapping of continuous floristic gradients in grasslands using hyperspectral imagery

Transitions between plant species assemblages are often continuous with the form of the transition dependent on the ‘slope’ of environmental gradients and on the style of self-organization in vegetation. Image segmentation can present misleading or even erroneous results if applied to continuous spatial changes in vegetation. Even methods that allow for multiple-class memberships of pixels presuppose the existence of ideal types of species assemblages that constitute mixtures—an assumption that does not fit the case of continua where any section of a gradient is as ‘pure’ as any other section like in modulations of grassland species composition.Thus, we attempted to spatially model floristic gradients in Bavarian meadows by extrapolating axes of an unconstrained ordination of species data. The models were based on high-resolution hyperspectral airborne imagery. We further modelled the distribution of plant functional response types (Ellenberg indicator values) and the cover values of selected species. The models were made with partial least squares (PLS) regression analyses. The realistic utility of the regression models was evaluated by full leave-one-out cross-validation.The modelled floristic gradients showed a considerable agreement with ground-based observations of floristic gradients (R²=0.71 and 0.66 for the first two axes of ordination). Apart from mapping the most important continuous floristic differences, we mapped gradients in the appearance of plant functional response groups as represented by averaged Ellenberg indicator values for soil pH (R²=0.76), water supply (R²=0.66) and nutrient supply (R²=0.75), while models for the cover of single species were weak.Compared to many other vegetation attributes, plant species composition is difficult to detect with remote sensing techniques. This is partly caused by a lack of compatibility between methods of vegetation ecology and remote sensing. We believe that the present study has the potential to increase compatibility as neither spectral nor vegetation information gets lost by a classifying step.